Blastall warning unable to open output file

Collectives on Stack Overflow. Learn more. Error in blastpgp: empty output file and checkpoint file not generated Ask Question. Asked 2 years, 4 months ago. Active 2 years, 4 months ago. Viewed times. Do you have any idea of what I am doing wrong? Do you know if there is a way to generate the checkpoint file with tblastn? Carina Paola Cornejo Paramo. Add a comment. Sign up or log in Sign up using Google.

Sign up using Facebook. Sign up using Email and Password. Post as a guest Name. Email Required, but never shown. The Overflow Blog. Podcast Making Agile work for data science.

Stack Gives Back Featured on Meta. New post summary designs on greatest hits now, everywhere else eventually. Visit chat. Related Hot Network Questions. With the edited file, there were no warnings and the taxonomic classifications were the same as with '-m 8'. So it appears that the bug is double spaces in the bitscore field of the '-outfmt 6' formatted blast output. I have just pushed a fix. I don't have a -outfmt 6 blast here. Could you please test the fix and report back?

Thanks again for your help in tracking that down. Skip to content. Star New issue. Jump to bottom. Copy link. Nick The text was updated successfully, but these errors were encountered:. Thanks for looking into this. I'm fixing this now.